PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0047s0134.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family C3H
Protein Properties Length: 1199aa    MW: 127032 Da    PI: 7.3381
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0047s0134.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH27.74.6e-092747626
                          -SGGGGTS--TTTTT-SS-SS CS
               zf-CCCH  6 CrffartGtCkyGdrCkFaHg 26
                          Cr++a +GtC +Gd+C+FaH 
  Sphfalx0047s0134.1.p 27 CRYWATSGTCFFGDQCNFAHN 47
                          ********************5 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.0512149IPR000571Zinc finger, CCCH-type
SMARTSM003562.3E-42248IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.49E-62550IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.0E-72750IPR000571Zinc finger, CCCH-type
PfamPF006421.3E-52746IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010310.4745988IPR000571Zinc finger, CCCH-type
SMARTSM003564.56187IPR000571Zinc finger, CCCH-type
PROSITE profilePS5001110.1537871094IPR000719Protein kinase domain
CDDcd001801.50E-7797945No hitNo description
SuperFamilySSF561125.43E-128011017IPR011009Protein kinase-like domain
Gene3DG3DSA:3.30.200.208.4E-7803928No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006468Biological Processprotein phosphorylation
GO:0004672Molecular Functionprotein kinase activity
GO:0005524Molecular FunctionATP binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1199 aa     Download sequence    Send to blast
MSVVCDSTHS VAMSASQTKL PASNITCRYW ATSGTCFFGD QCNFAHNAAD RAASGKSVPK  60
SEKACKELLL TGFCKKENNG CEYNHDIPGV TPSRAVSTSA PTANVSSNLA VSTSWTATAS  120
RAITTTTLSP GTAAAIRSKR LPVSAPAFVP AAVAAAQRAA LSAWGGVTPG GGKLLTTVNA  180
QATFTTPSAS VSSSPRQNGV LLSQSQATGG SDASSSTSLT LGKQESEVTV LSSEPPPPPA  240
AIVISSGLSS STLIPSVLNA QPFVPNSASA TVVNANGNVS LVGSTTAAPS TGTGNAAVLV  300
PSPSVASAVS AAPFVPKAKQ HLVAGGIGGG GVGLGVARPI VHGQQQQQPL MALTTPQQPQ  360
QQQQLQIRQH LSQLQQQMHQ QAAAAQVQAH MLSATARSMG SSGMSSNPYL SMDVPMVMPP  420
FRLPEGDDPA LGMTAMSPPN PAFLARVASN GGLPVLPAPD AMASMGIVGD GTGGLQLGNT  480
SSTSLSPPIN YSSGIASPQS SLMGTQQQLH HHVQRFQVQQ QHHSVSGGPV PQFPVRLPQK  540
VGGHTPEQQQ LQLLSTQAVE TGTGQAHEQA VPSSSASDSD QPSPPSSDTT SVQQSPQPRQ  600
QHSPQPQPQQ SPSTQQAAIK QQQQQIQQQQ QQLRQKLQQQ QQHLQQLQQQ RPQRSLSLQG  660
HQRLPSSGYM RSLSPVSGIA PVAAATHGGA TYFWGPGQGI GNVPHVLSSG SGFSVPGGRN  720
EPRIARGQSS SSAGTVPLGS RFLPEHLREE LRRRHALIHA QLDPEQDLVD LPEMVQGYHS  780
LFPLEDVNRE DDVPSTSFGV RTMIFKGISS SDGQAYAIRR IDSRQVIPTA ELATLAVEAV  840
ERWAPLSRHP HIVALRESLV SREVEDSAAL FFVHDYYPGA VTLEALHLQQ EQAGGVVHLT  900
VSEEQLWSYM VQLATVLRVV HGAGLFFRPG GLHPSKVLVP SRGRLRVSAV GILDVLHGDP  960
ADDPRVFQRE DLAGFGRLIL ALACGSVTNA SMEFMAPHYS ADLVRITQAL LASSPDKTEG  1020
VGISSIRQLY AVLAERMFGE IENVHLQNDE IMNELSKETE NGRLVRILVK LGMMNERPDD  1080
DMDPGWSETG DRYLLKLFRD FVFHQTTEEG TPLLDWGHVI ECLNKLDAGV PEKVILLSRD  1140
ERSMLIASYG DLKRCLEGVY QELVAKASGD KSRPSIAANL LAVSQAHAAA RLSQRQLA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4bwp_A2e-7474311697448PAB-DEPENDENT POLY(A)-SPECIFIC RIBONUCLEASE S
4bwp_B2e-7474311697448PAB-DEPENDENT POLY(A)-SPECIFIC RIBONUCLEASE S
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-